| １． |
Outline |
|
This class will provide an essential background on bioinformatics, basic techniques for database and/or web-tool analysis, using PubMed, CLUSTALW, BLAST, PSORT, SOSUI, KEGG, and GO, etc.
Covered topics include databases of life science journals, sequence, structure and function databases of DNA and protein molecules, advanced sequence and structure alignment methods, database of functions and utilities of the biological system, and Gene ontology.
|
| ２． |
Objectives |
|
This is a hands-on, project-oriented class.
The aims of this course are to gain essential background on bioinformatics and basic techniques to identify, obtain, and analyze research information on molecular biology by using Internet tools.
|
| ３． |
Grading Policy |
|
Progress report and Take-home Examination(50%), Practical Test(50%).
|
| ４． |
Textbook and Reference |
|
A Handout and resources will be provided throughout the course using LMS.
|
| ５． |
Requirements (Assignments) |
|
This class will be held based on essential background of Molecular Biology.
Students must be familiar with basic computer operations.
The Handout and the Slides will be copied to LMS.
Read materials and references before and after the class.
|
| ６． |
Note |
|
To Be Announced.
|
| ７． |
Schedule |
|
１. Introduction
|
２. CiNii, IPDL
|
| ３. PubMed |
| ４. NCBI,DDBJ |
| ５. CLUSTALW,TreeView |
| ６. BLAST |
| ７. BLASTN |
| ８. BLASTP |
| ９. BLASTX,TBLASTN |
| 10. PSI-BLAST,PHI-BLAST |
| 11. PSORT,SOSUI,TMHMM |
| 12. GO,GEO,KEGG |
13. Gene Ontology
|
| 14. Entrez、GenomeNET, etc. |
15. Final Exam and its review in practice
|
|
| １． |
Outline |
|
This class will provide an essential background on bioinformatics, basic techniques for database and/or web-tool analysis, using PubMed, CLUSTALW, BLAST, PSORT, SOSUI, KEGG, and GO, etc.
Covered topics include databases of life science journals, sequence, structure and function databases of DNA and protein molecules, advanced sequence and structure alignment methods, database of functions and utilities of the biological system, and Gene ontology.
|
| ２． |
Objectives |
|
This is a hands-on, project-oriented class.
The aims of this course are to gain essential background on bioinformatics and basic techniques to identify, obtain, and analyze research information on molecular biology by using Internet tools.
|
| ３． |
Grading Policy |
|
Progress report and Take-home Examination(50%), Practical Test(50%).
|
| ４． |
Textbook and Reference |
|
A Handout and resources will be provided throughout the course using LMS.
|
| ５． |
Requirements (Assignments) |
|
This class will be held based on essential background of Molecular Biology.
Students must be familiar with basic computer operations.
The Handout and the Slides will be copied to LMS.
Read materials and references before and after the class.
|
| ６． |
Note |
|
To Be Announced.
|
| ７． |
Schedule |
|
１. Introduction
|
２. CiNii, IPDL
|
| ３. PubMed |
| ４. NCBI,DDBJ |
| ５. CLUSTALW,TreeView |
| ６. BLAST |
| ７. BLASTN |
| ８. BLASTP |
| ９. BLASTX,TBLASTN |
| 10. PSI-BLAST,PHI-BLAST |
| 11. PSORT,SOSUI,TMHMM |
| 12. GO,GEO,KEGG |
13. Gene Ontology
|
| 14. Entrez、GenomeNET, etc. |
15. Final Exam and its review in practice
|
|
|