| Teachers | ASAHINA, Masashi | |
|---|---|---|
| Grade, Semester | Year 3 1st semest [Department of Biosciences, Faculty of Science and Engineering] | |
| Category | Special Subjects | |
| Elective, Credits | Elective 2credit | |
| Syllabus Number | 5K254 | |
This class will provide an essential background on bioinformatics, basic techniques for database and/or web-tool analysis, using PubMed, CLUSTALW, BLAST, PSORT, SOSUI, KEGG, and GO, etc.
Covered topics include databases of life science journals, sequence, structure and function databases of DNA and protein molecules, advanced sequence and structure alignment methods, database of functions and utilities of the biological system, and Gene ontology.
This is a hands-on, project-oriented class.
The aims of this course are to gain essential background on bioinformatics and basic techniques to identify, obtain, and analyze research information on molecular biology by using Internet tools.
Progress report and Take-home Examination(50%), Practical Test(50%).
| Kind | Title | Author | Publisher |
|---|---|---|---|
| Textbook | A Handout and resources will be provided throughout the course using LMS. | ||
| References | N/A |
To Be Announced.
N/A
| 1 | Introduction |
| 2 | CiNii, IPDL |
| 3 | PubMed |
| 4 | NCBI,DDBJ |
| 5 | CLUSTALW,TreeView |
| 6 | BLAST |
| 7 | BLASTN |
| 8 | BLASTP |
| 9 | BLASTX,TBLASTN |
| 10 | PSI-BLAST,PHI-BLAST |
| 11 | PSORT,SOSUI,TMHMM |
| 12 | GO,GEO,KEGG |
| 13 | Gene Ontology |
| 14 | Entrez、GenomeNET, etc. |
| 15 | Final Exam and its review in practice |
